A Parallel Monte Carlo Code for Simulation of Photon Propagation in Bioluminescence Imaging

doi:10.3778/j.issn.1673-9418.2009.02.008

Journal of Frontiers of Computer Science and Technology ›› 2009, Vol. 3 ›› Issue (2): 198-209.DOI: 10.3778/j.issn.1673-9418.2009.02.008

• 学术研究 • Previous Articles Next Articles

A Parallel Monte Carlo Code for Simulation of Photon Propagation in Bioluminescence Imaging

YANG Wei¹, YANG Xin¹⁺, DAI Xiaoqian¹, WANG Shan², LUO Jie¹, XU Min¹

1. Key Laboratory of Complex Systems and Intelligence Science， Institute of Automation， Chinese Academy of Sciences， Beijing 100190， China
2. School of Electronics Engineering， Xidian University， Xi’an 710071， China

Received:1900-01-01 Revised:1900-01-01 Online:2009-03-15 Published:2009-03-15
Contact: YANG Wei

自发荧光成像中光子传输蒙卡仿真的并行实现

杨薇¹,杨鑫¹⁺,代晓倩¹,王珊²,骆劼¹,徐敏¹

1. 中国科学院自动化研究所复杂系统与智能科学重点实验室，北京 100190
2. 西安电子科技大学电子工程学院，西安 710071

通讯作者: 杨薇

Abstract

Abstract: In the field of bioluminescence imaging， in order to accelerate simulation speed， a parallel code for Monte Carlo simulation of photon transport is developed. First the parallel mechanisms used in this parallel code and a hierarchical search method to accelerate the serial simulation speed are introduced， then experiments are conducted to validate the parallel code and study its performance， and the comparison of this parallel code with software MOSE and triMC3D is also done. Finally， the conclusion about this parallel code is made.

Key words: parallel, Monte Carlo method, bioluminescence imaging

摘要： 在生物自发光成像领域，将基于蒙特卡罗方法的光子前向传输仿真进行并行化，提高了仿真的速度。首先介绍了所采用的一系列并行机制和串行加速算法，然后分别对并行仿真结果进行正确性验证和性能验证，并与软件MOSE、triMC3D的结果进行了对比，最后对该并行平台进行了总结和展望。

关键词: 并行, 蒙特卡罗方法, 生物自发光成像

YANG Wei¹, YANG Xin¹⁺, DAI Xiaoqian¹, WANG Shan², LUO Jie¹, XU Min¹. A Parallel Monte Carlo Code for Simulation of Photon Propagation in Bioluminescence Imaging[J]. Journal of Frontiers of Computer Science and Technology, 2009, 3(2): 198-209.

杨薇1 ,杨鑫1+ ,代晓倩1 ,王珊2 ,骆劼1 ,徐敏1 . 自发荧光成像中光子传输蒙卡仿真的并行实现[J]. 计算机科学与探索, 2009, 3(2): 198-209.

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A Parallel Monte Carlo Code for Simulation of Photon Propagation in Bioluminescence Imaging

自发荧光成像中光子传输蒙卡仿真的并行实现

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